circhic.datasets.load_bsubtilis¶

circhic.datasets.load_bsubtilis()¶

Loads B. subtilis contact counts.

Returns:

dictionary

a dictionary containing:

• counts: an (n, n) ndarray corresponding to the raw contact counts for B. subtilis

• nbins: (l, ) ndarray containing the number of bins of all chromosomes.

Examples

loading the data

>>> from circhic import datasets
>>> data = datasets.load_bsubtilis()
>>> print(data)
    {'counts': array([[  62.,  469.,  457., ...,  382.,  701., 2311.],
        [ 469., 4908., 1245., ...,  362.,  642., 1227.],
        [ 457., 1245., 5940., ...,  487.,  753., 1180.],
        ...,
        [ 382.,  362.,  487., ..., 2740., 1496., 1210.],
        [ 701.,  642.,  753., ..., 1496., 3778., 2406.],
        [2311., 1227., 1180., ..., 1210., 2406., 5244.]]),
    'nbins': array([412])}

Examples using circhic.datasets.load_bsubtilis¶

Radius

Radius