circHiC: circular visualization of Hi-C data and integration of genomic data.
MacSyFinder is a framework to model and detect macromolecular systems and biosynthetic pathways in genomes.
iced to normalize HiC contact count data.
Pastis to infer 3D models of genomes.
HiC-pro to handle Hi-C data.
COCOA-Tree, a “COllaborative COevolution Analysis Toolbox” including tree-based vizualisation to study the co-evolution of proteins.