KBM-7 cell line, chromosome XI¶

from circhic import datasets, CircHiCFigure
import matplotlib.pyplot as plt

data = datasets.load_kbm7()
counts = data["counts"]
nbins = data["nbins"]


circfig = CircHiCFigure(lengths=nbins, chromosome_type="linear")
circfig.plot_hic(counts, inner_gdis=120, outer_gdis=120, cmap="bone_r",
                 inner_radius=0.6, border_thickness=0.005)

rax = circfig.plot_raxis()
rax.set_yticklabels(["6", "0", "6"], fontsize="small")

rax.set_ylabel("Genomic distance (Mb)", fontsize="small", color="0.3",
               position=(0, 1.03))
rax.tick_params(colors="0.3")