cocoatree.datasets.load_DHFR¶
- cocoatree.datasets.load_DHFR()[source]¶
load the DHFR dataset
This dataset comes from Kalmer et al, The Journal of Physical Chemistry B, 2024 (https://pubs.acs.org/doi/10.1021/acs.jpcb.4c04195)
Returns¶
- a dictionnary containing :
sequence_ids: a list of strings corresponding to sequence names
alignment: a list of strings corresponding to sequences. Because it is an MSA, all the strings are of same length.
sector_positions: a dictionnary of arrays containing the residue
positions associated to each sector as published in the original paper.
pdb_sequence: sequence extracted from E. coli’s PDB structure
pdb_positions: positions extracted from E. coli’s PDB structure
