General examples

The simplest SCA analysis ever

The simplest SCA analysis ever

Mapping original MSA, filtered MSA, PDB, and sectors

Mapping original MSA, filtered MSA, PDB, and sectors

Advanced usage of cocoatree

Running Cocoatree with your own metric

Running Cocoatree with your own metric

Mutual information versus SCA

Mutual information versus SCA

Perform full SCA analysis on the S1A serine protease dataset

Perform full SCA analysis on the S1A serine protease dataset

Datasets

Rhomboid proteases

Rhomboid proteases

DHFR proteases

DHFR proteases

S1A serine proteases

S1A serine proteases

Visualization

Simple tree visualization with metadata

Simple tree visualization with metadata

Plot sector together with (phylogenetic) tree and metadata

Plot sector together with (phylogenetic) tree and metadata

Specifying metadata’s colors

Specifying metadata's colors