cocoatree.msa.filter_seq_id

cocoatree.msa.filter_seq_id(sequences, sequences_id, list_id)

Filter sequences based on list

Filter a multiple sequence alignment to keep only sequences whose identifiers are in a user provided list.

Parameters

sequences : list of MSA sequences

sequences_id : list of the MSA’s sequence identifiers

list_id : list of sequence identifiers the user wants to keep. The identifiers must be in the same format as in the input MSA

Returns

new_msaBio.Align.MultipleSeqAlignment object,

filtered msa

id_list : list of sequence ID in the filtered MSA

seq_list : list of sequences of the filtered MSA