cocoatree.deconvolution.extract_principal_components¶

cocoatree.deconvolution.extract_principal_components(coevo_matrix)[source]¶

Perform principal component decomposition of a coevolution matrix

Arguments¶

coevo_matrixnp.ndarray: coevolution matrix

Returns¶

principal_componentsnp.ndarray (n_pos, n_pos): Principal components obtained from the PCA of the coevolution matrix

Examples using `cocoatree.deconvolution.extract_principal_components`¶

Perform full SCA analysis on the S1A serine protease dataset

Perform full SCA analysis on the S1A serine protease dataset