cocoatree.deconvolution.substract_first_principal_component

cocoatree.deconvolution.substract_first_principal_component(coevo_matrix)

Remove global correlations

In the sector literature (and data analysis), this corresponds to removing global correlations (from e.g. phylogenetic effects)

Arguments

coevo_matrixnp.ndarray (n_pos, n_pos),

coevolution matrix

Returns

coevo_matrix_subnp.ndarray (n_pos, n_pos),

coevolution matrix without global correlations

Examples using cocoatree.deconvolution.substract_first_principal_component

Perform full SCA analysis on the S1A serine protease dataset

Perform full SCA analysis on the S1A serine protease dataset