cocoatree.io.load_pdb

cocoatree.io.load_pdb(path2pdb, pdb_id, chain)

Read in a PDB file.

Import a PDB file and extract the associated sequence along with the amino acid positions

Arguments

path2pdb : path to the PDB file

pdb_idstr,

identifier of the PDB file

chainstr,

name of the chain to read

Returns

pbd_seqstr,

amino acid sequence of the PDB file

pdb_poslist,

PDB position of each amino acid

Examples using cocoatree.io.load_pdb

Perform full SCA analysis on the S1A serine protease dataset

Perform full SCA analysis on the S1A serine protease dataset