cocoatree.io.load_tree_ete3

cocoatree.io.load_tree_ete3(file_path)

From the loading of a Newick tree, generate a ete3.Tree object

The Newick file must be of the form: (A:1,(B:1,(C:1,D:1):0.5):0.5); or (A:1,(B:1,(C:1,D:1)95:0.5)98:0.5); if branch support values are available.

Parameters

file_path : path to the Newick file

Returns

tree_ete3 : ete3.Tree object

Examples using cocoatree.io.load_tree_ete3

Load a tree file

Load a tree file

Simple tree visualization with metadata

Simple tree visualization with metadata

Plot XCoR together with (phylogenetic) tree and metadata

Plot XCoR together with (phylogenetic) tree and metadata

Specifying metadata’s colors

Specifying metadata's colors

Plot a similarity heatmap of a XCoR along the phylogenetic tree

Plot a similarity heatmap of a XCoR along the phylogenetic tree