cocoatree.msa.compute_seq_identity¶

cocoatree.msa.compute_seq_identity(sequences)[source]¶: Computes the identity between sequences in a MSA (as Hamming’s pairwise distance)

Arguments¶

sequences : list of sequences

Returns¶

sim_matrix : identity matrix of shape (Nseq, Nseq)

Examples using `cocoatree.msa.compute_seq_identity`¶

Perform full SCA analysis on the S1A serine protease dataset

Perform full SCA analysis on the S1A serine protease dataset