circhic.datasets.load_ccrescentus¶

circhic.datasets.load_ccrescentus()¶

Loads C. crescentus contact counts.

Returns:

dictionary

a dictionary containing:

• counts: an (n, n) ndarray corresponding to the raw contact counts for C. crescentus

• nbins: (l, ) ndarray containing the number of bins of all chromosomes.

Examples using circhic.datasets.load_ccrescentus¶

Circular Hi-C and genomic data

Circular Hi-C and genomic data

Zooming in chromosomal interaction domains

Zooming in chromosomal interaction domains

Secondary diagonal from ‘distant’ mode

Secondary diagonal from 'distant' mode

Raw data

Raw data

Square versus circular displays

Square versus circular displays

Using a different color map

Using a different color map