cocoatree.deconvolution.remove_global_correlations¶
- cocoatree.deconvolution.remove_global_correlations(coevo_matrix)[source]¶
Remove global correlations by setting the first eigen value of the coevolution matrix to 0
In the sector literature (and data analysis), this corresponds to removing global correlations (from e.g. phylogenetic effects)
Parameters¶
- coevo_matrixnp.ndarray (n_pos, n_pos),
coevolution matrix
Returns¶
- coevo_matrix_subnp.ndarray (n_pos, n_pos),
coevolution matrix without global correlations
Examples using cocoatree.deconvolution.remove_global_correlations¶
A minimal coevo analysis using cocoatree.perform_sca()
A minimal coevo analysis using cocoatree.perform_sca
Perform full SCA analysis on the S1A serine protease dataset
Perform full SCA analysis on the S1A serine protease dataset